Date(s) - 2021-06-29 - 2021-06-30
10:00 CEST - 17:00 CEST
L2 Part 2 (14-15.06.21) – Mining Biomedical Data (pathways from Kegg, and Reactome, drugs, and diseases)
Date: 29-30 June 2021
Time: 10:00 – 13:00
Location: ONLINE! (Zoom)
Requirements: Working knowledge of Cytoscape (CBNA L1P1), computer with Cytoscape installed
Course L2P2 – Level 2, Part 2
Cytoscape is a multi-platform open-source tool for visualising interaction networks and integrating them with annotations, multi-omic profiles and other state data.
- During this 2-half-day course participants will learn how to access and export data from public resources including:
- Reactome and KEGG databases
- Work with protein complexes from EBI Complex Portal and Corum database.
- access the NDex (network data exchange) resource
- build networks enriched with Drugs and Diseases
This is a Level 2 course, which requires a working knowledge of Cytoscape. You will need to have Cytoscape installed on your computer.
This course is available via remote participation, connection details will be provided after registration.
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REQUIRED: Familiarity with Cytoscape (Experience or participation in course level 1)
Upcoming courses in the series:
Course 5 (TBA) – (2 half-days) – Clustering and modularity detection with biological networks.
Course 6 (TBA) – (2 half-days) Scripting and Automation with iGraph (R) and integration with Cytoscape
Course 7 (TBA) – (2 days) – Multi-omic data integration using networks