CBNA 2021 L2P2: Mining Biomedical Data (pathways, drugs and diseases)

Matt Rogon   2021-06-29   Comments Off on CBNA 2021 L2P2: Mining Biomedical Data (pathways, drugs and diseases)

Date(s) - 2021-06-29 - 2021-06-30
10:00 CEST - 17:00 CEST



L2 Part 2 (14-15.06.21) – Mining Biomedical Data (pathways from Kegg, and Reactome, drugs, and diseases)

Date: 29-30 June 2021
Time: 10:00 – 13:00
Location: ONLINE! (Zoom)
Requirements: Working knowledge of Cytoscape (CBNA L1P1), computer with Cytoscape installed

Course L2P2 – Level 2, Part 2

Cytoscape is a multi-platform open-source tool for visualising interaction networks and integrating them with annotations, multi-omic profiles and other state data.

**Course goals:**

    During this 2-half-day course participants will learn how to access and export data from public resources including:

  • Reactome and KEGG databases
  • Work with protein complexes from EBI Complex Portal and Corum database.
  • access the NDex (network data exchange) resource
  • build networks enriched with Drugs and Diseases

This is a Level 2 course, which requires a working knowledge of Cytoscape. You will need to have Cytoscape installed on your computer.

This course is available via remote participation, connection details will be provided after registration.

If you would like to register to receive these announcements early, please send an empty message with the title ‘Subscribe’ to

If you have further questions please don’t hesitate to contact us.
This email may reach you multiple times via different mailing lists.

Best wishes,
Matt Rogon

REQUIRED: Familiarity with Cytoscape (Experience or participation in course level 1)

Upcoming courses in the series:

Course 5 (TBA) – (2 half-days) – Clustering and modularity detection with biological networks.

Course 6 (TBA) – (2 half-days) Scripting and Automation with iGraph (R) and integration with Cytoscape

Course 7 (TBA) – (2 days) – Multi-omic data integration using networks


Attend the course from any EMBL outstation without physically attending in Heidelberg