Advanced ImageJ: Batch processing & Macros

Christian Tischer   2021-02-22   Comments Off on Advanced ImageJ: Batch processing & Macros

Date/Time
Date(s) - 2021-02-22 - 2021-02-24
09:30 CET - 12:30 CET

Categories

Prerequisites

  • Basic ImageJ/Fiji knowledge such as opening images, contrast adjustment, thresholding.

Content

The following concepts will be introduced with ImageJ/Fiji hands-on-sessions and exercises:

  • Macro language basics: variables, comments, commands, etc.
  • Using the macro recorder
  • Writing a simple macro for image processing
  • String manipulations and generalizing macros
  • Flow statements: Conditions and Loops
  • Batch processing
  • Good practices for reproducible results

Location

The course will be held online.

Notes

This course is fully organised by the Max Planck Society (see also https://www.bioimagingnet.mpg.de/training).

Thanks to an ongoing collaboration on teaching bioimage analysis the Max Planck Society generously provided 10 spaces for EMBL employees!

Teachers

  • Robert Haase, Bio-image Analysis at TU Dresden
  • Noreen Walker, Scientific Computing Facility of the MPI Molecular Cell Biology and Genetics
  • Gayathri Nadar, Scientific Computing Facility of the MPI Molecular Cell Biology and Genetics

Schedule

The course is distributed across three mornings:

  • Monday, 22. February 2021, 09:30 – 12:30 CET
  • Tuesday, 23. February 2021, 09:30 – 12:30 CET
  • Wednesday, 24. February 2021, 09:30 – 12:30 CET

As there will be some homework it is recommended that you plan some time for this in the afternoons.

Contact

Please send a mail to both walker@mpi-cbg.de and tischer@embl.de

Bookings

This event is fully booked.