Upcoming Courses

Date/Time Event
2022-01-17 - 2022-01-19
10:00 CET - 17:00 CET
[ALMF] Essentials I - Essentials of Widefield-Microscopy (online)
2022-01-18 - 2022-01-19
10:00 CET - 17:00 CET
[ALMF] Essentials I - Essentials of Widefield-Microscopy (online)
2022-01-24 - 2022-01-26
10:00 CET - 17:00 CET
[ALMF]: Essentials II - Essentials of confocal microscopy (online)
2022-01-25 - 2022-01-26
10:00 CET - 17:00 CET
[ALMF]: Essentials II - Essentials of confocal microscopy (online)
2022-02-14 - 2022-02-16
13:00 CET - 17:30 CET
Overview of Scientific Workflow Systems, Workshop
Online, Connection details will be shared via e-mail at a later point
2022-03-02
14:00 CET - 15:00 CET
Bio-IT Taskforce Meeting
Online, Connection details will be shared via e-mail at a later point
2022-05-04
14:00 CEST - 15:00 CEST
Bio-IT Taskforce Meeting
Online, Connection details will be shared via e-mail at a later point
2022-07-06
14:00 CEST - 15:00 CEST
Bio-IT Taskforce Meeting
Online, Connection details will be shared via e-mail at a later point
2022-09-07
14:00 CEST - 15:00 CEST
Bio-IT Taskforce Meeting
Online, Connection details will be shared via e-mail at a later point
2022-11-02
14:00 CET - 15:00 CET
Bio-IT Taskforce Meeting
Online, Connection details will be shared via e-mail at a later point

Planned courses 2022

The "lead" is to be intended as the reference contact within the Bio-IT project, although some course are mainly organised by collaborators.

Tag Meaning
:star: Confirmed with trainers
:calendar: Confirmed dates
  • 2022.01.31 - 2022.02.04 :star: :calendar: Data Carpentry
    • Lead: Renato
    • Team: Fotis Psomopoulos, Gaurav Diwan, Supriya Khedkar, Eleonora Mastrorilli, Luo Yan Yong (LuoYan), Hugo Tavares, Lisanna, Florian Huber, Ece Kartal
  • 2022.01.28 :star: Opening seminar: Workflow management systems
    • Lead: Lisanna
    • Team: Jean-Karim Heriche, Charles Girardot, Anthony Fullam, Matthias Monfort, Thomas Schwarzl, Christian Arnold, Christian Schudoma, Jelle Scholtalbers, Dominik Kutra, Jurij Pecar, Sudeep Sahadevan, Josep Moscardo, Christian Tischer, Renato
  • 2022.02.14 - 2022.02.16 :star: :calendar: Workflow management systems workshop
    • Lead: Lisanna
    • Team: see below
  • 2022.02.28 - 2022.03.04 Science FAIR Open Science training course, also related Open Science training materials - targeted internally EMBL
  • 2022.02.28 - 2022.03.02 :star: :calendar: Deep Learning course - 3 afternoons
    • Lead: Lisanna
    • Team: Renato, Lazlo, Dominik
  • 2022.03 Scientific Design course/club (with Inkscape) - 1 day - in person
    • Lead: Renato
    • Team: Thea Van Rossum?
  • 2022.03 HPC course (requires revision of materials)
    • Lead: Renato
    • Team: Lisanna
  • 2022.04 Python beginners - co-organised with EMBL Rome?
    • Lead: Lisanna
    • Team: Renato, Mattia Forneris?, Nicolas Decostes?, Francesco Tabaro?
  • 2022.04 R beginners (Tidyverse)
    • Lead: Renato
    • Team: Lisanna
  • 2022.05 Protein bioinformatics course
    • Lead: Renato
    • Team: Gibson group, Lisanna
  • 2022.05 Ontologies - Statistics, Biases, Tools, Networks, and Interpretation
    • Lead: Lisanna
    • Team: Balint Meszaros
  • 2022.06 CodeRefinery Intermediate/Advanced Python - training events call - training hubs or Bio-IT Python intermediate
    • Lead: Renato
    • Team: Lisanna, Mattia Forneris?
  • 2022.06 Exploratory data analysis / Metagenomics (Introduction to Dimensionality Reduction and Clustering)
    • Lead: Georg
    • Team: Zeller team?
  • 2022.07 Structural Biology and Dynamics course - possibly external, involve the Data Science Theory group
    • Lead: Lisanna
    • Team: Kashif, Jan Kosinski?
  • 2022.07 Train the Trainers (Carpentry or ELIXIR)
    • Lead: Lisanna
    • Team: Renato
  • 2022.09 Introduction to Python and Pandas (Software Carpentry based) - to be confirmed
    • Lead: Renato
    • Team: Lisanna, Mattia Forneris?
  • 2022.09 R beginners (without Tidyverse)
    • Lead: Renato
    • Team: TBD
  • 2022.09 Julia course - low priority, Python and R first
    • Lead: Renato
    • Team: Lisanna
  • 2022.10 Cloud and container computing / ISB-CGC course?
    • Lead: Lisanna
    • Team: Georg Zeller
  • 2022.10 Building websites with GitLab
    • Lead: Lisanna
    • Team: Renato
  • 2022.11 Workflow management systems
    • Lead: Lisanna
    • Team: Renato
  • 2022.11 Git Week
    • Lead: Renato
    • Team: Lisanna