Course content

The course is a one-day in person event and will cover the basics of implementing a plugin for napari.
The course is organized in two parts: The first part will cover the basics of implementing a plugin including the basics of how the napari viewer works. In the second part you will code your own custom plugin!

In more detail, the course will cover:

• How to make custom graphical user interfaces (GUIs) for your analysis functions
• The structure of a Napari plugin and how to make it installable using pip
• How to automatize the set-up using cookiecutter
• Making your first napari plugin

Prerequesites

• Napari readily installed on your system (e.g. using pip in a conda environment)
• Fluent in Python coding (you have written >1000 lines of code)
• Experience with Numpy

Optional preparation

The second portion of the workshop will be implementing a plugin. If you would like to bring your own analysis worksflows, the course instructors will consult with you on converting that into a napari plugin. If you do not have your own workflow to bring, we will have some examples prepared for you.

Teachers / Organizers

Kevin Yamauchi
Christian Tischer
Julian Hennies

Contact

Contact hennies@embl.de for questions or when facing issues with the registration.

Bookings