Date/Time
Date(s) - 2015-06-23 - 2015-06-25
09:00 CEST - 17:00 CEST
Location
EMBL Heidelberg - Seminar Room 1-202
Categories
This intermediate course will cover:
Day 1
- Introductory review of data import and visualisation
- Graph theory overview: Centralities, Graphlets, and Motifs for biological networks
- Exercises in biological network exploration using above e.g. degree, betweenness, graphlet signature, feed forward loops etc.
- Using Cytoscape and Gephi for graph analysis
Day 2
- Exploration of network modularity with: jActiveModules (experimentally-driven network modularity), clique percolation, clustering with neighborhood expansion
- Reconstructing networks from experimental data (inference)
Day 3
- Introduction to automation in Cytoscape
- iGraph in R
- Connecting Cytoscape with R