Intermediate Network Analysis

bio-it   2015-06-23   Comments Off on Intermediate Network Analysis

Date(s) - 2015-06-23 - 2015-06-25
09:00 CEST - 17:00 CEST

This intermediate course will cover:

Day 1

  • Introductory review of data import and visualisation
  • Graph theory overview: Centralities, Graphlets, and Motifs for biological networks
  • Exercises in biological network exploration using above e.g. degree, betweenness, graphlet signature, feed forward loops etc.
  • Using Cytoscape and Gephi for graph analysis

Day 2

  • Exploration of network modularity with: jActiveModules (experimentally-driven network modularity), clique percolation, clustering with neighborhood expansion
  • Reconstructing networks from experimental data (inference)

Day 3

  • Introduction to automation in Cytoscape
  • iGraph in R
  • Connecting Cytoscape with R