Overview of scientific workflow systems
Course information
Workshop title: Overview of scientific workflow systems
Pre-workshop seminar date: 28 January 2022
Workshop dates: 14-16 February 2022, during afternoons
This is an hands-on introduction to scientific workflow systems, intended for researchers who are either:
- programmers, familiar with some concepts of workflows and workshop management systems (WMSs), aiming at getting a broader overview and a comparison between systems;
- intermediate/advanced programmers that do not make use of WMSs yet, and look at them as the natural next step to develop their programming skills;
- researchers with beginners programming experience but interested in improving reproducibility of their analyses (also in light of the EMBL Open Science Policy).
Schedule
| Day | Content | Audience |
|---|---|---|
| 28/01/2022 2 – 3:30 PM |
Why workflows | 1:30 h | Open & recorded |
| 14/02/2022 1 – 5 PM |
Workshop & participants introduction | 45 mins | Closed |
| Technical introduction | Renato Alves | 45 mins | Closed | |
| Coffee | 30 min | ||
| Galaxy: running the shared example | Charles Girardot | 2h | Closed | |
| 15/02/2022 1 – 5:30 PM |
Snakemake: running the shared example | Christian Schudoma | 2h | Closed |
| Coffee | 30 min | ||
| NextFlow: running the shared example | Anthony Fullam | 2h | Closed | |
| 16/02/2022 1 – 4 PM |
Use cases @EMBL| 1 h | Open / recorded |
| WMSs comparison | Round table | chair: Renato Alves | Open / recorded | |
| Coffee | 30 min | ||
| Technical talks | 1 h | Open / recorded | |
| Closing remarks | 30 min | Open | |
Registration
Please register to the hands-on part of the workshop (Closed sessions) through the form below. Please notice that currently only applicants from EMBL will be accepted. To facilitate the selection process, please use your embl email.
Bookings
Bookings are closed for this event.