Category: Bio-IT

Anything specific to the Bio-IT Project

Working with GitLab

How to obtain training material from GitLab/GitHub If you’d like to download teaching material from a project on GitLab or GitHub, but you aren’t yet familiar with the command line… Read more »

Cheat Sheets

Here is a collection of cheat sheets that Bio-IT community members have found useful. Bash: https://files.fosswire.com/2007/08/fwunixref.pdf Python (generic): https://github.com/tobyhodges/ITPP/blob/master/CheatSheet.pdf Python (data analysis/pandas): https://github.com/pandas-dev/pandas/blob/master/doc/cheatsheet/Pandas_Cheat_Sheet.pdf R (data analysis/dplyr/tidyr): https://www.rstudio.com/wp-content/uploads/2015/02/data-wrangling-cheatsheet.pdf Data transformations in… Read more »

display git branch and status in shell prompt

When coming back to a project after a bit of time away, I used to always lose track of which branch I was working on. Now I have the branch name displayed automatically in my shell PS1, as well as a colour-coded indication of the current repo status, to prevent me from making a bunch of changes and then realising I’m working on the wrong branch!